Main Panel

The main panel will allow you to carry out all your analyses according to the option you have chosen. Don’t forget that the DREPAL-IPCINGSTOOLSKIT is a pipeline and that the output of the previous stages determines the rest of your analyses. In DREPAL-IPCINGSTOOLSKIT there is an indicator which allows you to see if a task is being executed. This is the animation at the top right of your screen when an operation is launched.

Process running signal

• All available operations of DREPAL-IPCINGSTOOLSKIT :

• Sequence Import
  • Clinical Isolates (fastq,gz)
    • Method 1
    • Method 2
    • Method 3
  • References Import (fasta files)
• Quality Controle
  • Visualisation
  • Trimming
• Reference Indexed
• Host Substract
• Pathogen Extraction
• Variant Calling
• Mutation Matrix
• Variant Annotation
• Directory Management
• Doudle Digital Soustraction